Semares – biomedical data integration solutions

Introducing Semares: A Comprehensive Omics Data Management, Analysis, and Visualization Platform

In the field of genomics and life sciences, managing large amounts of data can be a challenge. With the increasing trend of high-throughput sequencing technologies, the volume of data generated is only set to increase, making it imperative for scientists and researchers to have access to effective data management and analysis tools. Enter Semares, a software product designed specifically to help manage and analyze omics data, while providing advanced features for semantic biomedical data integration, workflow analysis, and visualization. With its cutting-edge technology, Semares provides a complete solution for scientists and researchers in the life sciences industry.


An easy-to-use Omics Data Management System

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Your Semares

Customized Biomedical Data Integration Solutions

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Semares – Omics Data Management made easy!
  • FAIR management of multi-omics and other high-throughput experimental data
  • Flexible experiment and sample templates with units, dictionaries and ontologies
  • Integrated workflow system for user-specific multi-omics and other high-throughput data
  • Data privacy by authentication and authorization, ownership control and audit trails
  • API accessibility for automated data analyses and customized visualizations
  • FAIR Semantic Biomedical Data Integration

    One of the key features of Semares™ is its support for FAIR (Findable, Accessible, Interoperable, and Reusable) semantic biomedical data integration. This technology helps to ensure that data is properly indexed and stored, making it easily accessible and usable for analysis. Additionally, Semares™ provides a comprehensive metadata management system, allowing users to store and manage all relevant data about their projects, samples, and analyses.
  • Nextflow Workflow Analysis Plugins

    Semares™ also includes powerful Nextflow workflow analysis plugins, making it possible for scientists and researchers to design and execute complex workflows for data analysis and processing. This functionality makes it easier for users to automate repetitive tasks and ensure that all analysis processes are properly executed.
  • Jupyter Notebook Interface

    In addition to its workflow analysis capabilities, Semares™ also features a Jupyter notebook interface, providing a powerful and flexible platform for data analysis and visualization. Jupyter notebooks allow users to combine code, text, and visualizations in a single document, making it possible to create dynamic and interactive reports that can be shared with others.
  • Extendable Interactive Visualizations

    Visualizing data is a critical component of data analysis and interpretation. Semares™ provides extendable interactive visualizations, allowing users to create custom charts, plots, and graphs that can be customized to meet their specific needs. This feature is essential for identifying trends, patterns, and outliers in large datasets, helping scientists and researchers to gain insights into their data.
  • Comprehensive Search Features

    Finally, Semares™ includes comprehensive search features, making it easy for users to find and access the data they need. With its advanced search algorithms, users can quickly search for specific data points, sample sets, or project information, helping them to stay organized and on top of their data.
  • Your Semares – for Integrative Bioinformatics and Systems Medicine use cases
    • Semantic storage modules for experimental data such as transcriptomics, proteomics, imaging etc.
    • Integrative bioinformatics and machine learning analyses with FAIR & semantic result storage
    • Interactive data and result visualization, export of publication-ready figures
    • Custom-tailored use case interactivity, custom data types and models
    • Interconnected Semares instances and distributed learning workflows
  • Conclusion

    Semares™ is a comprehensive omics data management, analysis, and visualization platform that provides a complete solution for scientists and researchers in the life sciences industry. With its FAIR semantic biomedical data integration, Nextflow workflow analysis plugins, Jupyter notebook interface, extendable interactive visualizations, and comprehensive search features, Semares™ is the ideal platform for managing and analyzing large amounts of omics data.
  • - Semares is an on-premise software and runs in a Docker environment
  • - Semares has been successfully tested on MacOS and Ubuntu Linux environments
  • - Windows users please contact us how to install Semares on your system